Welcome to 7T MRI Pipeline HPC’s documentation!
- About
- Usage
- Step 1 - conversion to BIDS, MP2RAGE denoising, and MRIQC
- Step 2 - functional MRI stream
- Automated segmentation of hippocampal subfields + Quantitative susceptibility mapping
- Step 3 - diffusion MRI stream
- (Optional) Running FreeSurfer-informed FSL DTI tractography on GPU
- Metrics Collation
- Running on one node
- (Optional) HTML Quality Control Report Generator
- Main Pipeline
- Sub-Pipelines
- Heuristics
- Install
- FAQs
- Troubleshooting
- Manual-Correction
- Citing
- Requests
Indices and tables
genindex
Install
FAQs
Manual-Correction
Citing
Requests